PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0116211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 215aa    MW: 23427.8 Da    PI: 7.6992
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0116211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1794.2e-5626121297
                   NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                             +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plk yl+
  RcHm_v2.0_Chr2g0116211  26 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKGYLN 112
                             89************************************************************************************* PP

                   NF-YB  89 kyrelegek 97 
                             kyre+egek
  RcHm_v2.0_Chr2g0116211 113 KYRETEGEK 121
                             *******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MSGKRKQTSP VGSPLSGGNV SDGGSKEQDR FLPIANVSRI MKKSLPANAK ISKEAKETVQ  60
ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKGY LNKYRETEGE  120
KNSMTRGQED HNHSSNDGHH INNNNQVHNG TNEINTVGIN KVDFFNNGGF YSLGGQQMSA  180
PKGFGESGRV IGYGDQTLVA YGDGNANHLH NGIGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-64NF-YB family protein