PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0117781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 246aa MW: 27951.4 Da PI: 9.2029

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0117781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.2	1.5e-32	169	227	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ RcHm_v2.0_Chr2g0117781 169 LDDGYKWRKYGQKVVKNTQHPRSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHVHS 227 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MTSTTSQAML NQQGLFDQNQ DQAPIQMGFF SYPPNNLTFS SLGCQQSLKA LSSLPSSLGS 60 DDHHAPSTNL SETLIPSLNT PLKHREAHIT SDFGGSQLLS LQRSSANLWS WGDQVSECLS 120 SKRSSGDIHD HHHVGLGVSA MKMKKIKAIR RKVREPRFCF KTMSEVDVLD DGYKWRKYGQ 180 KVVKNTQHPR SYYRCTMDNC RVKKRVERLA EDPRMVITTY EGRHVHSPSH DLEDSQSPSH 240 LNNFFW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39410.1	3e-55	WRKY family protein