PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0118211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 322aa    MW: 34537.1 Da    PI: 8.6807
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0118211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20128177255
                     AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a++ a+++++g
  RcHm_v2.0_Chr2g0118211 128 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAAQAYDTAALRFRG 177
                             8********.**********66.....56*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MLLWLDRERE MSAMVSALTH VVTGEEQSRF DVVNGSDSPA GNGLCGAVGS KREREEEGGG  60
GGQNMFESVS RLCRTFGDFP QQGSPSSSSV FPENSITRTR RTTSTTPPVQ TAYEYSAPQL  120
SEQPIRRKYR GVRQRPWGKW AAEIRDPFKA ARVWLGTFDT AEAAAQAYDT AALRFRGNKA  180
KLNFPENVRL RSLPSSAAEN PMTTQPTVSG SSNALLSIPT STEPIVHSQA AASFQQQRPM  240
SLYDQMVLLS SSSSPSATSS STLASSVSSA SSSPPPPAFS SLFSAQATSP VQLRQATGDQ  300
TGGADFSVQQ QWSTSSGHYS TS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-29ERF family protein