PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0118731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 153aa    MW: 17376.6 Da    PI: 9.0394
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0118731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.71.1e-1932121290
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 
                             +Y+ YA+ +GF  r ++ ++    g+it+r++vC+kegkre +  + +++ r+ ++etr++C a   ++ +k ++++ +t++++eHn
  RcHm_v2.0_Chr2g0118731  32 WYRMYATALGFIARLQRVTRG-IGGRITRRRLVCNKEGKREAKWLQkEDRVRNAKQETRCNCLAACCIHFNKnSQTYIITEFKTEHN 117
                             7**************999987.9999**************9987663567788999******9999999888899************ PP

                    FAR1  87 Hela 90 
                             H+la
  RcHm_v2.0_Chr2g0118731 118 HDLA 121
                             **96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MGKSRVGKSF AELTADDVEG REFTTLDDAE NWYRMYATAL GFIARLQRVT RGIGGRITRR  60
RLVCNKEGKR EAKWLQKEDR VRNAKQETRC NCLAACCIHF NKNSQTYIIT EFKTEHNHDL  120
AMHSNGSVTN ADMDTSVQGT LVQSAPLGQM TTW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-13FAR1 family protein