PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0118791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 207aa    MW: 24033.3 Da    PI: 8.3664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0118791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.64.4e-176153161309
                    GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.. 245
                             +g+rL++f e++++ f f+ +++ + e  ++ +++v   +a++ n++++  +++++s sl +   ++L  + +lsPk++v+v++e  
  RcHm_v2.0_Chr2g0118791   6 LGRRLKEFSESINLLFIFDQMMMATEE--DFAKIEVVA-DAIVANCMIHQLHMPSRSISLMK---AFLGGMSKLSPKLIVLVQEElf 86 
                             699*****************7555444..469998876.67888999988889988888888...********************75 PP

                    GRAS 246 ..adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerh 309
                               ++  s  F+e f+eal++y +l d l ++++ e     + +E+e+lg +i + v +   e++ r+
  RcHm_v2.0_Chr2g0118791  87 nfSKKPSMVFAEFFSEALHHYNSLCDFLVTSFSGEYkMGLRQIEKEVLGIKILESVRQFPCEKEDRM 153
                             433445669*******************88887776356689************9998777754444 PP
2GRAS22.21.5e-07163192344373
                    GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaW 373
                              +++gy v++e+g l l+Wk+rpL+++S W
  RcHm_v2.0_Chr2g0118791 163 KGFKGYWVQHEKGRLALCWKSRPLTTASIW 192
                             4488************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MFCTPLGRRL KEFSESINLL FIFDQMMMAT EEDFAKIEVV ADAIVANCMI HQLHMPSRSI  60
SLMKAFLGGM SKLSPKLIVL VQEELFNFSK KPSMVFAEFF SEALHHYNSL CDFLVTSFSG  120
EYKMGLRQIE KEVLGIKILE SVRQFPCEKE DRMLWEDCFA SLKGFKGYWV QHEKGRLALC  180
WKSRPLTTAS IWVPLTYKIK KNYVNPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.17e-13GRAS family protein