PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0121451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 223aa    MW: 25302.3 Da    PI: 6.0296
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0121451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.24.3e-163898357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0121451 38 NRWAPTPPQLRILKGLYYDkgFKYPTLEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 98
                            8****************96569*************************************97 PP
2Wus_type_Homeobox94.68.7e-313799364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0121451 37 SNRWAPTPPQLRILKGLYYdKGFKYPTLEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 99
                            79***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQPTEEGGS IQAAGSSNRW APTPPQLRIL KGLYYDKGFK  60
YPTLEQIQEI CLHLKQYGQI EDKNVFFWFQ NLKARERQKL KEFRNVPVGG SLNLNFGSTS  120
STDDGRSIDL NFGSRVGYGV DGSIMEQRGE YHQEIETLPL FPMHGEDILG NMKTTSEGGG  180
GYGGGSHISL ELSLNSYRDA NMAYNLESQL WNSKTLFKHR SWV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-22WOX family protein