PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0121991
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 238aa    MW: 27077.8 Da    PI: 6.8856
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0121991genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.33.5e-5658153297
                   NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                             +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk+yl+
  RcHm_v2.0_Chr2g0121991  58 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVHPLKLYLQ 144
                             89************************************************************************************* PP

                   NF-YB  89 kyrelegek 97 
                             kyrelegek
  RcHm_v2.0_Chr2g0121991 145 KYRELEGEK 153
                             ******996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MEDDNHGNNR LNGPNGGSPE NPCLNNSTPA SSCNSNINIH HNHNQSNNHN HHHHSSNKEQ  60
DRFLPIANVG RIMKKVIPGN GKISKDAKET VQECVSEFIS FVTGEASDKC QREKRKTING  120
EDIIWAITTL GFEDYVHPLK LYLQKYRELE GEKLNVPKQQ RLEQRLQQQQ QQQVVQQEQE  180
QQSIPNSYSV YSSTSLLSQP TSFITTHHHD PAFSLPFSPS SIQKQLQPQD QIDSVGHW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-66NF-YB family protein