PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0122871
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 315aa    MW: 36166.7 Da    PI: 6.7963
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0122871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-5171311128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lp+GfrFhPtdeelv++yL kk++++++++  +ike+d+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg
  RcHm_v2.0_Chr2g0122871   7 LPAGFRFHPTDEELVNHYLIKKCASQNISV-PIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATG 92 
                             799***************************.88***************7666789******************************** PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              dk++ +   ++ g+kk Lvfy g+apkg+kt+W+mheyrl
  RcHm_v2.0_Chr2g0122871  93 ADKHIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 131
                             *****98..778***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MKAELDLPAG FRFHPTDEEL VNHYLIKKCA SQNISVPIIK EIDLYKFDPW QLPEMALYGE  60
KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKHIGKP KALGIKKALV FYAGKAPKGV  120
KTNWIMHEYR LANVDRSASK KNHNLRLDDW VLCRIYNKKG SIEKYNTATM DRNKVATYSE  180
IMDHEQKPVL KNIQFNVAPS QGQQTPLAAV PVSQHTDMLS GDYSAPRLQH TTDCSSSSDH  240
VFSPEVQSEF QWSSPEFNEL DKSMNLNFLD NNDEFNYMDG FSLADISDPF GNQAQAQPQY  300
QMDQQDLFMY LQNQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-108NAC family protein