PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0124881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 192aa    MW: 21552.9 Da    PI: 4.6425
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0124881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.53.6e-163191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++ql++L+el++    r p+ e+++e+   l    +++ ++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0124881 31 NRWTPTPDQLRILQELYYDraLRSPTPEQIQEICLYLqqygQIEGKNVFFWFQNLKARERQ 91
                            7****************96579*************************************97 PP
2Wus_type_Homeobox97.88.7e-322992264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            +++RWtPtp+Q++iL+ely+ ++lr+P+ e+iq+i   L++yG+ie+kNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0124881 29 TNNRWTPTPDQLRILQELYYdRALRSPTPEQIQEICLYLQQYGQIEGKNVFFWFQNLKARERQK 92
                            679***************9879*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MELQAQQPTE EGGSIQAAGS SANTPIRPTN NRWTPTPDQL RILQELYYDR ALRSPTPEQI  60
QEICLYLQQY GQIEGKNVFF WFQNLKARER QKLREFRNVR VGGSLDLNFG PTSSTSTDRS  120
IDLNFGSRVG YGADGSIMEQ RGEYHQEIET LPLFPMHGED ILGNMKTTSE GGSGSRISLE  180
LILNSYGDAD MA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-28WOX family protein