PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0125611
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 99aa    MW: 11303.9 Da    PI: 10.5279
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0125611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.6e-083774237
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl 37
                            ++R+++t+ ql++L+ l++    +yp+ e+++e+  +l
  RcHm_v2.0_Chr2g0125611 37 SNRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHL 74
                            58****************96569***********9888 PP
2Wus_type_Homeobox41.53.3e-143781346
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkie 46
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++ G+ +
  RcHm_v2.0_Chr2g0125611 37 SNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKHMGRSR 81
                            79***************9889********************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQPTEEGGS IQAAGSSNRW APTPPQLRIL KGLYYDKGFK  60
YPTPEQIQEI CLHLKHMGRS RTKTSSFGSR TSRLVRGRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-09WOX family protein