PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0125871
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 208aa    MW: 23062.3 Da    PI: 4.635
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0125871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.53.6e-162282357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0125871 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 82
                            7****************96569*************************************97 PP
2Wus_type_Homeobox94.97e-312183364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0125871 21 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 83
                            78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MEQQTQQQIE DGGNNQAAGT NNRWAPTPPQ LRILKGLYYD KGFKYPTPEQ IQEICLHLKQ  60
YGQIEDKNVF FWFQNLKARE RQKLKEFRNV PVGGSLDLNF GSTSSTDDGR SIDLNFGSRV  120
GYGVDPYSSS PFNTNTSTTS FGTTGGQSFM EQRGGDHQEI ETLPLFPMHG EDIFGNMKTS  180
SEGGSGYGGD SRISLELSLN SYGDADMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-22WOX family protein