PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0126861
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 225aa    MW: 25858.2 Da    PI: 6.9701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0126861genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.3e-103078555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               +E++RR++++  ++ L +llP++  ++++ ls  e   +A++YIk L+
  RcHm_v2.0_Chr2g0126861 30 RRVIEKNRRNHMKILYSHLNSLLPNQ--NSKEPLSLPEQIDEAINYIKTLE 78
                            5689*********************6..26666***************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MGILVLNLQP DVKQVMDNTR ATTSGTKVER RVIEKNRRNH MKILYSHLNS LLPNQNSKEP  60
LSLPEQIDEA INYIKTLESN LQKSKQKRDN LKFGRKRSYE LCSSTFETRS AAPTKSPQIQ  120
IHENGSTLEV VLSTGLHNQF IFYDIIRILD QEQADVVHAS FSTSGDSILH LVRAELGKSM  180
LDFGAARITE KLKRIVNGSA SDEELQHDDQ DYFWDFQIHP QMWDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18797KRDNLKFGRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-38bHLH family protein