PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0127081

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 408aa MW: 47043.6 Da PI: 9.3102

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0127081	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	22	78	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR t++qle+Le++++ ++yps++ r+eL++kl+L++rq ++WF+ rR k++k RcHm_v2.0_Chr2g0127081 22 RTKRKMKTRSQLEVLEQAYAAEQYPSESVRAELSAKLDLSDRQLQMWFCHRRLKDRK 78 689****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
METGSEGEKT RAEAQAQEGE IRTKRKMKTR SQLEVLEQAY AAEQYPSESV RAELSAKLDL 60 SDRQLQMWFC HRRLKDRKPT PTTGKRQRKD SPAGTTGVVS EEMAGSEPPP QQLIIEARAV 120 AFVEAQLGEP FREDGPILGL EFDPLPPGAF GSSVGVATVG QQKQSGWPYS ANIYEQSNAK 180 PIKGASRTVH EYQFLPEKPT VRTDTYERAA PSHHYGSPTE SRHARIPLST VSSFIHGNEQ 240 VPTVYRFQSQ MAGLNLLSQQ GRAGHLLPSA AEEYGNVHGK NFTNITMDAH FSAHPINQLN 300 NPFIPFARSV AHDEDDVLRL ERKHKSEEAR IMREVEAHEK RIRKELEKQD ILRRKREEQI 360 RKEMERIDRE RRKEEERLLR EKQREEERYL REQRRELERK ENSYRRSQ

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

METGSEGEKT RAEAQAQEGE IRTKRKMKTR SQLEVLEQAY AAEQYPSESV RAELSAKLDL  60
SDRQLQMWFC HRRLKDRKPT PTTGKRQRKD SPAGTTGVVS EEMAGSEPPP QQLIIEARAV  120
AFVEAQLGEP FREDGPILGL EFDPLPPGAF GSSVGVATVG QQKQSGWPYS ANIYEQSNAK  180
PIKGASRTVH EYQFLPEKPT VRTDTYERAA PSHHYGSPTE SRHARIPLST VSSFIHGNEQ  240
VPTVYRFQSQ MAGLNLLSQQ GRAGHLLPSA AEEYGNVHGK NFTNITMDAH FSAHPINQLN  300
NPFIPFARSV AHDEDDVLRL ERKHKSEEAR IMREVEAHEK RIRKELEKQD ILRRKREEQI  360
RKEMERIDRE RRKEEERLLR EKQREEERYL REQRRELERK ENSYRRSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	8e-92	HB-other family protein