PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0127161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 483aa MW: 52559.8 Da PI: 6.5397

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0127161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.7	1.1e-27	187	241	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++ RcHm_v2.0_Chr2g0127161 187 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 241 5689***************.******************************86 PP
2	Myb_DNA-binding	39.3	1.5e-12	190	239	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e++ ++v+av+qlG + +++I + mg +t+ ++ s++qky+ RcHm_v2.0_Chr2g0127161 190 VDWTPELHRRFVQAVEQLGVDkaVPSRILELMGiDCLTRHNIASHLQKYR 239 57******************************889**********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MLIVSPLREQ HKDENRGGDQ MESFSIGANV VDFSEFSGGN LLDSIDFDDL FIGIDSEMDV 60 LPDLEMDSEM LAEFSVSAGE ESDFNTSPVS VEKWEEDNKA STAEEREDDH HQKVDSSGSG 120 TTEFKYSSSD NSTHGGCGGG EEIVSKRDEI AGAVNKNTSS SPKETTDKAR KSSSSSAQSK 180 SSHGKRKVKV DWTPELHRRF VQAVEQLGVD KAVPSRILEL MGIDCLTRHN IASHLQKYRS 240 HRKHLLAREA EAASWTQRRQ MYGSAAAAAG GGGVGVKRPS SEMGPWLAPP TMGFPPPMTP 300 MHQHHHGHHP QFRPLHVWGH PTVDQSMMHM WPPKHLAPFP SPQPPPSWPP APPPPPDNSY 360 WHHHHQRVPA NAVLTPGTPC FPRQMTTTHT PPATRFPAPP VPGIPPHPGM YKLDPGGLGA 420 PGQSGPHPLV DFQPSKESID AAIGDALSKP WLPLPLGLKP PSTDSVMGEL QRQGIPKVPP 480 SCA

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MLIVSPLREQ HKDENRGGDQ MESFSIGANV VDFSEFSGGN LLDSIDFDDL FIGIDSEMDV  60
LPDLEMDSEM LAEFSVSAGE ESDFNTSPVS VEKWEEDNKA STAEEREDDH HQKVDSSGSG  120
TTEFKYSSSD NSTHGGCGGG EEIVSKRDEI AGAVNKNTSS SPKETTDKAR KSSSSSAQSK  180
SSHGKRKVKV DWTPELHRRF VQAVEQLGVD KAVPSRILEL MGIDCLTRHN IASHLQKYRS  240
HRKHLLAREA EAASWTQRRQ MYGSAAAAAG GGGVGVKRPS SEMGPWLAPP TMGFPPPMTP  300
MHQHHHGHHP QFRPLHVWGH PTVDQSMMHM WPPKHLAPFP SPQPPPSWPP APPPPPDNSY  360
WHHHHQRVPA NAVLTPGTPC FPRQMTTTHT PPATRFPAPP VPGIPPHPGM YKLDPGGLGA  420
PGQSGPHPLV DFQPSKESID AAIGDALSKP WLPLPLGLKP PSTDSVMGEL QRQGIPKVPP  480
SCA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	1e-69	G2-like family protein