PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0127221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 189aa    MW: 21067.4 Da    PI: 4.5507
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0127221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.92.6e-162282357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0127221 22 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLqqygQIEDKNVFFWFQNLKARERQ 82
                            8****************96569*************************************97 PP
2Wus_type_Homeobox95.93.4e-312183364
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0127221 21 SNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLQQYGQIEDKNVFFWFQNLKARERQK 83
                            79***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MELQAQQPTE EGGSIQAAGS SNRWAPTPPQ LRILKGLYYD KGFKYPTPEQ IQEICLHLQQ  60
YGQIEDKNVF FWFQNLKARE RQKLKEFRNV PVGGSLDLNF GSTSSTDDGR SIDLNFGSRV  120
GYGVDGSIME QRGEYHQEIE TLPLFPMHGE DIFGNMKTTS EGGSGYGGDS RISLELSLNS  180
YGDADMALV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-22WOX family protein