PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0127381

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 110aa MW: 12749.5 Da PI: 5.097

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0127381	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.2	7.8e-15	31	91	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+t+t++ql++L+ l++ + p+ e+++e+ +l ++++++V++WFqN +a e++ RcHm_v2.0_Chr2g0127381 31 NRWTPTPDQLRILQVLYYDkvLKCPTPEQIQEICLNLqqygQIEDKNVFFWFQNLKALERQ 91 7**************96679********************************99986 PP
2	Wus_type_Homeobox	91	1.2e-29	29	92	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RWtPtp+Q++iL+ ly+ + l+ P+ e+iq+i +L++yG+iedkNVf+WFQN ka erqk RcHm_v2.0_Chr2g0127381 29 TNNRWTPTPDQLRILQVLYYdKVLKCPTPEQIQEICLNLQQYGQIEDKNVFFWFQNLKALERQK 92 679*************9868899************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence
MELQAQQPTE EGGSIQAARS SANTPIRPTN NRWTPTPDQL RILQVLYYDK VLKCPTPEQI 60 QEICLNLQQY GQIEDKNVFF WFQNLKALER QKLKEFQNVP VGGSLDLLWC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	9e-24	WOX family protein