PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0127531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 418aa    MW: 46248.4 Da    PI: 7.7835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0127531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08143163526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C +++r G C++Gd+C FaHg
  RcHm_v2.0_Chr2g0127531 143 VCADYRR-GGCSRGDSCEFAHG 163
                             799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MSSVCAEQHK FHTSHHLLSS KKTHNLLREV DIPPRKLLTR RTAAHQDLSF SHDMYGTTDS  60
PRFSASDEAL LRKFLPYNTG ASDDDEDDAS DDPYSSDHFR MFEFKVRRCT RSRSHDWTDC  120
PFAHPGEKAR RRDPRRYHYS GTVCADYRRG GCSRGDSCEF AHGVFECWLH PARYRTEACK  180
DGKNCKRKVC FFAHTPRQLR ILPVNHSRSS SPDEVISPSS GSCKKSIKYL NSANSPSSTH  240
CCLFCRSVTS SPTSTLLGMS HLSPPLSPMS PYGESKCHFS SGLDQRHASA AGMLSYKDVL  300
SELMTSLEAM KFNNMEATSS PVSSPISSAA ANYQNTPLVD VSSYNAFAAA AEDQQQQFIL  360
SPSTPSPSSA GINFFSRGSS TGNCSRKSLV FDEQNNATEI NGGCGPDPDL GWVNDLLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.12e-79C3H family protein