PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0127621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SBP
Protein Properties Length: 244aa    MW: 27690.7 Da    PI: 9.6852
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0127621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-41123200178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +Cq+++C+adls+ak yhrrhkvC++hskapvvl++g++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++
  RcHm_v2.0_Chr2g0127621 123 CCQADKCTADLSDAKLYHRRHKVCDHHSKAPVVLLAGISQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNSS 200
                             6**************************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MEQIAVVLTT LASLLSLFNL LSFPSPNTKH HITNKPIDIL LPLPDLDSYR LPHFLLSPLL  60
LFLIMEESKS KQRKQENPHV VVKKEVEEEE VLYSKKKKLQ VVSGSGSGSG SVKNQNLNQM  120
MRCCQADKCT ADLSDAKLYH RRHKVCDHHS KAPVVLLAGI SQRFCQQCSR FHELSEFDDT  180
KRSCRRRLAG HNERRRKNSS ESYAEGSSRK GTSTQSCGKV DDMGSGRIQI NIQENSTCKH  240
FQIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.12e-46SBP family protein