PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0128541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 483aa MW: 53055.6 Da PI: 9.203

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0128541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	71	91	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H RcHm_v2.0_Chr2g0128541 71 CEICGKGFQRDQNLQLHRRGH 91 *******************88 PP
2	zf-C2H2	13.4	0.00022	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ RcHm_v2.0_Chr2g0128541 145 WKCEKCSKRYAVQSDWKAHSKTC 167 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MLEKINMAHE EEAINSNGFL QNPVAVLGSN PPPVKKKRNL PGNPGKFNLH PEAEVIALSP 60 KTLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR TSKEPRKRVY VCPEKSCVHH 120 HPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF 180 SRRDSFITHR AFCDALAEET ARVNAVSNIH NNAMPSNINY HHYMGNNASS LLLGPPNMPQ 240 LQFSSIFKPI SSNDTPDTVS QNTRGLSLWM GQGSNSTHEE MTVNNQHHHH QLGSVSSSAG 300 SIFGDPNNIS VSCSVPPPPS DHYQLNWVLG SNNKLSTSNN AHHQDQLTIT STSAASSLPS 360 LYTHQTPSAN MSATALLQKA AQIGATSTDT SSLLGSFGLK CNNNNITSSA SQAVIQVQDG 420 SKVCGLYGTV ENPGAHDHLL HMHQAKRRHI QSEESAGGGQ TRDFLGVGVQ TICHSSPING 480 YWV

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MLEKINMAHE EEAINSNGFL QNPVAVLGSN PPPVKKKRNL PGNPGKFNLH PEAEVIALSP  60
KTLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR TSKEPRKRVY VCPEKSCVHH  120
HPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF  180
SRRDSFITHR AFCDALAEET ARVNAVSNIH NNAMPSNINY HHYMGNNASS LLLGPPNMPQ  240
LQFSSIFKPI SSNDTPDTVS QNTRGLSLWM GQGSNSTHEE MTVNNQHHHH QLGSVSSSAG  300
SIFGDPNNIS VSCSVPPPPS DHYQLNWVLG SNNKLSTSNN AHHQDQLTIT STSAASSLPS  360
LYTHQTPSAN MSATALLQKA AQIGATSTDT SSLLGSFGLK CNNNNITSSA SQAVIQVQDG  420
SKVCGLYGTV ENPGAHDHLL HMHQAKRRHI QSEESAGGGQ TRDFLGVGVQ TICHSSPING  480
YWV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-144	C2H2 family protein