PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0128781

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 241aa MW: 26962.6 Da PI: 8.4628

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0128781	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.9	3.3e-33	16	108	1	93
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaCk++r+kC+++C+lap fp e++++f++vhk+FG+snv+k++k+++e +r+++++slv+eA +r++dPv G +g ++ + +l RcHm_v2.0_Chr2g0128781 16 ACAACKHQRKKCNEGCTLAPFFPVERNREFQAVHKVFGVSNVTKMVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMIFDEL 102 7*****************************************************************************999888888 PP DUF260 88 eqlkae 93 + k++ RcHm_v2.0_Chr2g0128781 103 KMYKNH 108 877754 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MHRKNNGTAG AGAVPACAAC KHQRKKCNEG CTLAPFFPVE RNREFQAVHK VFGVSNVTKM 60 VKNANEANRR KVVDSLVWEA LCRQKDPVLG PYGEYRMIFD ELKMYKNHEN QTVPLQVQKG 120 MCYKSLTDLV AWNYETNGIS DGINGGNGIT TTNNNLDYDL QVNENVRINS VPPYGYPLTC 180 EQEIAAEKIK QVKIAADSIV VPVVHQQGHS INNINQQYYI SGQLNQHIGK PLERTIWEGG 240 S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	2e-38	LBD family protein