PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0130611
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 179aa    MW: 19580.9 Da    PI: 8.6152
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0130611genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19105156156
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                             s y+GVr+++  g+W+AeIrdp+    r  r++lg+f t+eeAa+a++ a+++++g+
  RcHm_v2.0_Chr2g0130611 105 SEYRGVRQRP-GGKWAAEIRDPR----RaIRVWLGTFQTEEEAARAYDTAALEFRGA 156
                             569*******.9*********82....48*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MRSHSGGLPK EQEHAIIVSA LKQVVRGGVR TNNAPSLPHQ PPPPQRIYYA SSSLPPTEGA  60
DQVVIPYSDS DTCPVCNMET DDCLGCGLFP PSEQYKGKGK KMKTSEYRGV RQRPGGKWAA  120
EIRDPRRAIR VWLGTFQTEE EAARAYDTAA LEFRGADRAK LNFPPSSDTG GTTSSRAFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-27ERF family protein