PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0130891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 246aa    MW: 27179.2 Da    PI: 4.737
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0130891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48e-3076133359
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D ++WrKYGqK++kgs++pr+YYrC+++  Cp++k+vers +dp+++ itY  +Hnh+
  RcHm_v2.0_Chr2g0130891  76 DSWTWRKYGQKPIKGSPYPRGYYRCSFSkACPARKQVERSCSDPRMLMITYACDHNHP 133
                             99*************************989***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MEEHPKFYRN PVFRDPQDAE PISENDPDSP SSGEETKVTT APSPKGRRGV QKRVVSVPIG  60
DVEGSKGKGD GYPPFDSWTW RKYGQKPIKG SPYPRGYYRC SFSKACPARK QVERSCSDPR  120
MLMITYACDH NHPMPTTKGS HPAALTTPVT AKSPITEPEL PDRVAPSEEL TTFSSQVDLE  180
LSGNSEALLG DYGCWFNDLG TTTVLESSIC VGHSDYVDVD VATRLEHEDE YLFADLGELP  240
ESSVIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-63WRKY family protein