PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0131211
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 259aa    MW: 29335.1 Da    PI: 9.6466
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0131211genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP40.83.5e-1362124271
                 E2F_TDP   2 keksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                             +eksL ll+q+f+kl+        + ++v+       +++k+RRiYD +NVL ++nliek     + k+++rw g
  RcHm_v2.0_Chr2g0131211  62 REKSLALLAQNFVKLFVW------DAQNVS------VMRTKVRRIYDTANVLLSVNLIEKthtadTGKSAYRWLG 124
                             689999999999999874......223332......3588***********************999*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MATSSYLETL QTSRKSKNTH TWKGFGAVPN SLKELREEGL DLTPIPAACN NNNNNPLDET  60
KREKSLALLA QNFVKLFVWD AQNVSVMRTK VRRIYDTANV LLSVNLIEKT HTADTGKSAY  120
RWLGLNGRRD GLNLNSEPNL EQAKKRSFGT DLTNTCSKRS KVMEKRVQDQ GEVENCNSDC  180
CGANSKESSK SYQFGLFALV AVPRARKGVD INKICWESLG AYYRPQYQNQ ALKELFSHYR  240
EAWMLWNSQV AEKNPIQSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-47E2F/DP family protein