PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0131231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 83aa    MW: 9453.69 Da    PI: 11.1996
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0131231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP39.59.4e-131383971
                 E2F_TDP 39 vknkrRRiYDilNVLealnliek.....kekneirwkg 71
                            +++k+RRiYD +NVL+++nliek     + k+++rw g
  RcHm_v2.0_Chr2g0131231  1 MRTKVRRIYDTANVLSSVNLIEKthtvdSGKSAYRWLG 38
                            689********************9999999******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    
MRTKVRRIYD TANVLSSVNL IEKTHTVDSG KSAYRWLGLN GRRDGLNLNS EPNLEQAKKR  60
SFGTNLTNSS SKRSKVMEKR VQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.29e-17E2F/DP family protein