PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0131371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 437aa MW: 49595.2 Da PI: 4.7229

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0131371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	7e-36	14	104	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d+++++++swse+g sfvv+d++efak++Lp yFkh+nf+SFvRQLn+YgF+kv+ e+ weF++++F + RcHm_v2.0_Chr2g0131371 14 FLSKTYDLVDDPSTNHVVSWSETGCSFVVWDPTEFAKDLLPMYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFVR 91 9*************************************************************9998.........****** PP XXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkk 101 g ++ll++i+r+k RcHm_v2.0_Chr2g0131371 92 GGRHLLKNIHRRK 104 *********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDGSQGGSNA PAPFLSKTYD LVDDPSTNHV VSWSETGCSF VVWDPTEFAK DLLPMYFKHN 60 NFSSFVRQLN TYGFRKVDPE QWEFANEEFV RGGRHLLKNI HRRKPIHSHS MQNHEYSSIP 120 LSEKEREEYE NKINRLNQEK RLLEVDLQRH QKENQEFELQ MQLLNEQLQK MELQQRQYTT 180 FLAQVLKKPG FASLLMQQSE NHNKKRRLLK PNLFPDDFSM EGLNLNSQKE NLDSVSTSTS 240 KSDRLEKMES SLNFWEDFLR GIEAIPEEVN DIGPLSEASP IIVSEMQDLG MNSRPCSPIS 300 NLSSPTSMNV HSSPEAGSAN FFDILAISSM CQTVDFRTKS SGLDMNSKPD SALAVEAPKE 360 RVVEMTTAEP AAANDVFWEQ CLTETPGLED AQEVQSERRD GDGGAGDTNA AAQKKLWWNT 420 DSVDNFTNQI GRLTPAT

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDGSQGGSNA PAPFLSKTYD LVDDPSTNHV VSWSETGCSF VVWDPTEFAK DLLPMYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEEFV RGGRHLLKNI HRRKPIHSHS MQNHEYSSIP  120
LSEKEREEYE NKINRLNQEK RLLEVDLQRH QKENQEFELQ MQLLNEQLQK MELQQRQYTT  180
FLAQVLKKPG FASLLMQQSE NHNKKRRLLK PNLFPDDFSM EGLNLNSQKE NLDSVSTSTS  240
KSDRLEKMES SLNFWEDFLR GIEAIPEEVN DIGPLSEASP IIVSEMQDLG MNSRPCSPIS  300
NLSSPTSMNV HSSPEAGSAN FFDILAISSM CQTVDFRTKS SGLDMNSKPD SALAVEAPKE  360
RVVEMTTAEP AAANDVFWEQ CLTETPGLED AQEVQSERRD GDGGAGDTNA AAQKKLWWNT  420
DSVDNFTNQI GRLTPAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	4e-80	HSF family protein