PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0133371
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 270aa    MW: 30073.8 Da    PI: 9.8021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0133371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022100122123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C + F ++  L  H++ H
  RcHm_v2.0_Chr2g0133371 100 FSCNYCQRKFYSSQALGGHQNAH 122
                             89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MKPQASDYPQ SENSSLKVSI METQSQKPQK QPVPEDTNQQ LPQQAPKPAD IVLDLSLISN  60
KISDQRLNTE LNLIDCVDLN MCSETSTDDP KGTSHEPRIF SCNYCQRKFY SSQALGGHQN  120
AHKRERTLAK KAVAHKIGAV SDNFRLLSHR FSSMASLPLH GSFNNRSLGI QVHSTIHKPS  180
WYQSSLYGHN GNFLRHPIDQ QPAIGRLAAA GSMSSSSSSG GGMGRFETST ARKFFPVAER  240
IGRFWWNSSV SHLKTTQDHE LQKLDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.18e-43C2H2 family protein