PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0134351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 243aa    MW: 26030.3 Da    PI: 4.4758
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0134351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.21e-163191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr2g0134351 31 NRWAPTPAQLRILQGLYYDkgYKYPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARERQ 91
                            7****************96579*************************************97 PP
2Wus_type_Homeobox92.93e-302992264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            +++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr2g0134351 29 TNNRWAPTPAQLRILQGLYYdKGYKYPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARERQK 92
                            579***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MELQAQQQVE DGGNNQAAGS SANTPIRPTN NRWAPTPAQL RILQGLYYDK GYKYPTPEQI  60
QEICLHLKPY GQIEDKNVFF WFQNLKARER QKLKEFRKVR VGGSLDLNFG STSSTDDGRS  120
IDLNFGSTGS TGDDGSIDLT LGSRVGYGVD PYSSSPFNAN ISTTSFGPTG GQSSMDQRGG  180
DHQEVETLPL FPVHGEDVLG DPNTTSEGGS AYGYYSGGSG GYNSGSPVSL ELSLNPSGPA  240
DLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-21WOX family protein