PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0139661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 262aa    MW: 28219.2 Da    PI: 4.996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0139661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1881131155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  RcHm_v2.0_Chr2g0139661  81 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAALSIKG 131
                             68*****998.**********843...6***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MAAEPNNSEA ESTTSNSSLC SVASSPCLSG LLQSTTHSNS PSNTTKNPKT SQKGDSSSEQ  60
QQKSLKRGRV SRDDNNSSKH PVYRGVRMRN WGKWVSEIRE PRKKSRIWLG TFSTAEMAAR  120
AHDVAALSIK GNSAILNFPE LAGLLPRPES LKPPDIQAAA AKAAAMVHLS STITTSSSST  180
SSSSSSSEGL ESEEDLGEIV ELPNIEDSFN SGEPGSEFIL VNDSVDIAWL YGHPPLFGLD  240
HNLIPSITFE EDLVSWDIQM IT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-52ERF family protein