PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0139721
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 100aa    MW: 10807.6 Da    PI: 10.907
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0139721genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.2e-221963246
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                            +i n sn qvtfskR +g++KKA+EL++LC++e+a+++fs+++k 
  RcHm_v2.0_Chr2g0139721 19 KIPNRSNLQVTFSKRCAGLFKKASELCTLCGVEIAIVVFSPSNKP 63
                            588**************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    
MAMQIKKPSQ GRQKIAITKI PNRSNLQVTF SKRCAGLFKK ASELCTLCGV EIAIVVFSPS  60
NKPFSFGHPS IKTLIGRFLS PSPSSFPSST YSTSSVPQEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32M-type_MADS family protein