PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0139731
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 226aa    MW: 25590.3 Da    PI: 8.158
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0139731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41e-192062345
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            i   sn qvtfskR  g++KKA+EL++LC++e+ +i+fs+ +k
  RcHm_v2.0_Chr2g0139731 20 IPKRSNLQVTFSKRCSGLFKKASELCTLCGVEIVIIVFSPANK 62
                            667899**********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MAMKSKKPNQ GRQKIVIAKI PKRSNLQVTF SKRCSGLFKK ASELCTLCGV EIVIIVFSPA  60
NKPFSFGHPS VESLISRFLT PSHLSISWST QHPQYCREVS VEHKLNMQLT QTQGHLEAEK  120
QRGEALDKLS EDSERSSHCQ WENSIEELGL DELQTLKAAL EELKKNVTEE VHKMNDPCNS  180
SVPFFMMNGI RLDHRLSERK AVEINVSHGS MIPPSAYSFG YEHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-51M-type_MADS family protein