PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0140091
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 333aa    MW: 36368 Da    PI: 6.508
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0140091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19.2e-17227261135
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  RcHm_v2.0_Chr2g0140091 227 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 261
                             99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MELPEFYVGG YFDGQLSTEK RQLADQKPAG GEQFTIDDLL DFSNEDALVT DGFFDSTVAG  60
NSTDSSTVTA VDSCNSSVSG GEPQLSGNRS FGDSQFSGDL CVPYDDLAEL EWLSNFVEDS  120
FSVDKDLQAL QILSTTTAKP QTPETSSSSA ETPQNPPLFH HETPLPGKAR SKRSRAAPGD  180
WTTRLLHLIT PNNSSEPKPA PKTTTSSQKK REGGNCNSGS DSSGRKCLHC ASEKTPQWRT  240
GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVSARHSN SHRKVLELRR QKEFQRSHQH  300
QFLSPSSIFG VSNGGGDEFL IHHRGANDFR QMM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-73GATA family protein