PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0140241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HB-other
Protein Properties Length: 297aa    MW: 34177.3 Da    PI: 5.7413
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0140241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.31.9e-062684652
                            S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHH CS
                Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrR 52
                             ft++++  +e+ F++  ++ +++e  + LA++           ++t +qV  WFq +R
  RcHm_v2.0_Chr2g0140241 26 VFTNSEIMKMENIFKEtpQQSLTQEFFQNLATNFscqpsrvgksDITRQQVEGWFQSKR 84
                            69*************988999***********************************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MKDSKLAKNL HRSETMERKP MNSLSVFTNS EIMKMENIFK ETPQQSLTQE FFQNLATNFS  60
CQPSRVGKSD ITRQQVEGWF QSKRKEIQAK GTSSSGAFDW VVESHEDLSD LTMFSNAPDN  120
SQKPKDPCVT DLSELAFEAK SSKDGAWYDV ASFLSYRVVS SGELEVRVRY AGFGREEDEW  180
VNVRRAVRDR SIPLEESECH KVKVGDLVLC FQEREDEAVY CDAHVLEIER SLHDQTGCRC  240
IFVVRFDHDK SKEQVSLGRL CCRPSQYTSS AIVKPNQDIN TKQEINRDKD MKFSFLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.12e-63HB-other family protein