PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0140271

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 133aa MW: 15404.3 Da PI: 10.8072

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0140271	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.3e-20	33	94	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+ R+++t+eq++ Leel+++ ++p+a+++++ +++l +++ ++V++WFqN+Ra+e++ RcHm_v2.0_Chr2g0140271 33 RSCRWNPTPEQIKDLEELYRSgIKTPTAQQIRQVTARLrnygRVEGKNVFYWFQNHRARERQ 94 578***************99************************************97 PP
2	Wus_type_Homeobox	110.6	8.7e-36	34	96	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + RW+PtpeQik Leely+sG++tP++++i+++ta+L++yG++e+kNVfyWFQN++aRerqk+ RcHm_v2.0_Chr2g0140271 34 SCRWNPTPEQIKDLEELYRSGIKTPTAQQIRQVTARLRNYGRVEGKNVFYWFQNHRARERQKR 96 67***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence
MYAVVPVMSD EQGRSSSGCF YSDKQPAAGA PRRSCRWNPT PEQIKDLEEL YRSGIKTPTA 60 QQIRQVTARL RNYGRVEGKN VFYWFQNHRA RERQKRRREL ISMHQSDTKQ QQQTLINSKI 120 TSLQKKESAG GTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01500.1	3e-27	WOX family protein