PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0142471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 228aa    MW: 26131 Da    PI: 5.2031
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0142471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-141663148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W + Ed++ +d+vk++G g W + +r+ g++R++k++++rw++yl
  RcHm_v2.0_Chr2g0142471 16 KGAWAASEDQIVIDYVKKHGVGKWGKLSRETGLKRCGKSVRLRWLNYL 63
                            799*******************************************97 PP
2Myb_DNA-binding543.9e-1769113147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  RcHm_v2.0_Chr2g0142471  69 RGNITEDEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNSC 113
                             7999******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGESSTCYDK NEGPKKGAWA ASEDQIVIDY VKKHGVGKWG KLSRETGLKR CGKSVRLRWL  60
NYLRPGIVRG NITEDEEELI IRLHKLLGNR WSLIAGRIPG RTDNEIKNYW NSCLKRKLQQ  120
QNHLAVPRNE EIREDLSSSA AVAAAAEKNP HLTGNNVNED EDYHQHHDVD FGVGIEFEAI  180
DNNNGTGDDE HLRDDLWWNN FIMDLNDIQL DASEFQPDFP EIRLGNLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-51MYB family protein