PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0142501
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 231aa    MW: 26622.6 Da    PI: 6.1075
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0142501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.8e-131663148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W + Ed++  d++k++G g W + +r+ g++R++k++++rw++yl
  RcHm_v2.0_Chr2g0142501 16 KGVWAASEDQIVRDYIKKHGVGKWGKLSRETGLKRCGKSVRLRWLNYL 63
                            789*******************************************97 PP
2Myb_DNA-binding53.65.3e-1769112146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  RcHm_v2.0_Chr2g0142501  69 RGNITEDEEELIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNS 112
                             7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGESSTCYDK NEGPKKGVWA ASEDQIVRDY IKKHGVGKWG KLSRETGLKR CGKSVRLRWL  60
NYLRPGIVRG NITEDEEELI IRLHKLLGNR WSLIAGRIPG RTDNEIKNYW NSRLKRKLQQ  120
QNHLEVPEVP RNKEIREDLS SSAAVAAAAE KNPHLTGNNV NEDEDYHQHH DVDFAVGIEF  180
EATDNNNGTG DDEHLRNDLW WNNFIMDLND IQLDASEFQP DFPEIRLGNL R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-52MYB family protein