PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0142541

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Dof

Protein Properties

Length: 228aa MW: 24435.8 Da PI: 8.1028

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0142541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.1	5.3e-40	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+P+Ggg+rkn k+s RcHm_v2.0_Chr2g0142541 16 EQEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGSLRNIPIGGGSRKNTKRS 76 57899****************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MQDPTTFQSM KAQFPEQEQL KCPRCDSSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGSL 60 RNIPIGGGSR KNTKRSSSGS KRSSSATNSS SSTLSSSAAA VAAAAAAQNQ DPQPDRTRLY 120 GPKMDPDNPM LDISGSFSSL LTSNDQFGSL MEGLNPNGSG LKLMQMGEFG ENVMDSSGHG 180 LNSDPGLEVQ SSGNPGSYMG LQSGDSSCWN GSNGWPDLAI YTPGSSFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-37	Dof family protein