PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr2g0143461

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 534aa MW: 57571 Da PI: 8.8901

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr2g0143461	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.3e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H RcHm_v2.0_Chr2g0143461 90 FICEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	12.6	0.0004	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ RcHm_v2.0_Chr2g0143461 166 WKCEKCSKKYAVQSDWKAHSKTC 188 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MKALQFQQQQ QVDENMSNLT SASGDQASVS SGNRSTEIGT SNFSQQYFPP PPPHANSQGV 60 KRKRNQPGNP DPDAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTSKEVRKKV YVCPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKKYAVQSD 180 WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINPTTL QTLSSPPPLQ 240 PQPQNHMNLM GGGPHINFNP HGHDLHAYSA FMKKEQNDHQ QISSFSSTNS LLPPWLASGP 300 PPSATSIFSG NQDHHHHHHH DFQQNLELGP NPNPSLGPTL PQFQVPGAAA ALSSPPHMSA 360 TALLQKAAQM GATMSSSSTS SGSVSVPAGV MARAHLSDFG GQVSAAGNGI GGGAVGGSVH 420 HQQQQQQQAS SLLHDMMNSL SSGTGFEGTS FEDAFGGILG NSKSKDGSRS GGADENGVVG 480 GGEGLTRDFL GLKAMSHSDM MLNIAGLGNC VSNNNSSSTR DLQNQVPQKP NWQG

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MKALQFQQQQ QVDENMSNLT SASGDQASVS SGNRSTEIGT SNFSQQYFPP PPPHANSQGV  60
KRKRNQPGNP DPDAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTSKEVRKKV YVCPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCEK CSKKYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAINPTTL QTLSSPPPLQ  240
PQPQNHMNLM GGGPHINFNP HGHDLHAYSA FMKKEQNDHQ QISSFSSTNS LLPPWLASGP  300
PPSATSIFSG NQDHHHHHHH DFQQNLELGP NPNPSLGPTL PQFQVPGAAA ALSSPPHMSA  360
TALLQKAAQM GATMSSSSTS SGSVSVPAGV MARAHLSDFG GQVSAAGNGI GGGAVGGSVH  420
HQQQQQQQAS SLLHDMMNSL SSGTGFEGTS FEDAFGGILG NSKSKDGSRS GGADENGVVG  480
GGEGLTRDFL GLKAMSHSDM MLNIAGLGNC VSNNNSSSTR DLQNQVPQKP NWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	129	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	C2H2 family protein