PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0145191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 301aa    MW: 34043 Da    PI: 6.7324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0145191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT+ Ed +l ++++ +G g W+  +++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr2g0145191 14 RGAWTAMEDRILREYITTHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                            89********************************************97 PP
2Myb_DNA-binding51.62.2e-1667110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  RcHm_v2.0_Chr2g0145191  67 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                             7899******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGRSPCCAKE GLNRGAWTAM EDRILREYIT THGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKVQDHS  120
STNSEANITH RKPPNHQTQQ KNTNVVRTKA SRCTKVFIPH LSQMDEETNP TVQQVAAPFL  180
NHDYYDQVNN NDDPPLGMMG TGTDHQPADD LPPFLNLEID DENSNSCGFM VDFKMDESFL  240
SEFLNVDFSQ LYSSTSTANG GDGVKAAISS SCGDDNHHKL HGPDFQSSMA PILDSELDWL  300
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-64MYB family protein