PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0145221
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 232aa    MW: 26465.6 Da    PI: 9.3337
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0145221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-193279148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l+++ + +G + Wk+Ia++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr2g0145221 32 KGAWTAEEDQKLAEVTAIHGAKKWKSIAAKAGLNRCGKSCRLRWLNYL 79
                            79********************************************97 PP
2Myb_DNA-binding50.45e-1685130148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  RcHm_v2.0_Chr2g0145221  85 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 130
                             78999*****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MAPKKEESAK REVMKMKSLE AVMKNTKREV NKGAWTAEED QKLAEVTAIH GAKKWKSIAA  60
KAGLNRCGKS CRLRWLNYLR PNIKRGNISD QEEDLILRLH KLLGNRWSLI AGRLPGRTDN  120
EIKNYWNSHL SKRINQKEKQ RNIGGDDDST RQISTVDQKP GTHLGEQNKI HGEMKQDSSS  180
EEGTTTTTTT SASNKGGDDH ENYSNLDIDI DDFFDFSNEG PFNLEWVNKF LY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.11e-53MYB family protein