PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0145301
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 73aa    MW: 8646.97 Da    PI: 9.7871
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0145301genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-132259140
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                            rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++
  RcHm_v2.0_Chr2g0145301 22 RGPFSQQEENLIIELHAVLGNK-WSQIAAQLP-GRTDNEV 59
                            89********************.*********.*****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    
MGEDRKSCRL RWMNYLRPYL KRGPFSQQEE NLIIELHAVL GNKWSQIAAQ LPGRTDNEVL  60
VMVKRKINTN FED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-31MYB family protein