PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0146551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 480aa    MW: 54444.4 Da    PI: 9.2965
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0146551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07455474525
                             --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                              Cr++a+ G C yGd+CkF+H
  RcHm_v2.0_Chr2g0146551 455 MCRHYAQ-GRCYYGDNCKFSH 474
                             6******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    
MASVTQQSKH HQYLEKGEDF SESGGSDPGY DSDDSVEDPS YSTLEEIHTH FSNLSIDSKP  60
KARMVEVLDL ESDLDGEEVV VPELNQNDAK SYEHVQKMIQ DEQIGKLKVE QCKLYLRKNG  120
LRLTGNKDTL IQRIKEHLEI LNGGGEKKYP ASSFVLNCKG DACTGDVVMF EQNVYEMFDI  180
ASRSGRGPPC GTRIVTGRIV KESYGAAKQQ HTFTIEVLWS KGVKPLPPLH PLLIKGRNLY  240
RLKTLRQRWE DDGERQKALM EKHSRGSLAR SDREARVQKK EMRETLKTNR ISRKEQKNNQ  300
SQLNSASTFK SSVQPHQSCP LVYPAMLHQS FGPGNTKMGP QQLRLSTDST KAAAQTHHSQ  360
KPATQPQDAQ SGLLIVDCGK VTTQPQMKNN TVMQDRHFNQ ASQHLKVSNY DTVMKLHSYS  420
EFMGLPPPPK KTYQKQSLTS VNHSLPTSPR RQKQMCRHYA QGRCYYGDNC KFSHELRELQ