PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0146961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 165aa    MW: 19229.7 Da    PI: 9.4461
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0146961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141665148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                            + +WT+ Ed++ +d+vk +G g W++ +++ g  ++R+++++++rw++yl
  RcHm_v2.0_Chr2g0146961 16 KVAWTAFEDQIVKDYVKNHGAGKWDKLSKETGecLKRSGNSVRLRWLNYL 65
                            568*********************************************97 PP
2Myb_DNA-binding51.22.8e-1675115547
                             -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             T+ E++ll++++k+lG++ W++Iar+++ gRt++q+k++w++ 
  RcHm_v2.0_Chr2g0146961  75 TEYEEDLLIRLHKLLGNR-WSLIARRIP-GRTENQVKNYWNST 115
                             888***************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MGSRSHCPRD KHGRKKVAWT AFEDQIVKDY VKNHGAGKWD KLSKETGECL KRSGNSVRLR  60
WLNYLRPDIN TSSITEYEED LLIRLHKLLG NRWSLIARRI PGRTENQVKN YWNSTLKKKL  120
SQKNLCEELC NWTLEDSSSP VPTTDQDDPH WTKKNVYEEG QACQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27920.19e-48MYB family protein