PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0147401
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 146aa    MW: 16239.7 Da    PI: 6.1085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0147401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-11621203896
                             EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3  38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                             + +  g+sWe+++  ++k+ + + ++ Wk F ++n+Lk+gD +vF++++ s+++lv++v
  RcHm_v2.0_Chr2g0147401  62 VLTFAGKSWEMTCDGSNKKHKGLDKESWKAFIDDNNLKAGDGCVFEVMECSSTKLVLRV 120
                             56678********7766666678889********************8744555555443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    
MAESAQSSSD TTIQLHGEEF WPLSGKPYFD IILAKTHVKP YYKLGIPAKL HPILPSCSFP  60
TVLTFAGKSW EMTCDGSNKK HKGLDKESWK AFIDDNNLKA GDGCVFEVME CSSTKLVLRV  120
QILRGDIPAE LLEKEKGDEA EKPIIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-09B3 family protein