PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0147411
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 142aa    MW: 15979.3 Da    PI: 6.7863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0147411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.5e-1129115493
                             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                             +lt+s+v    +l +p k      ++  ++   t+ +   +sWe+++  ++ +++  + +k W  Fv++n+Lk+gD +vF+l+  + 
  RcHm_v2.0_Chr2g0147411  29 ILTKSHVKPIYQLGIPAKLE-PV-LP--SGSIHTVLTFGAKSWEMTY--NGEKRHkQFDRKSWGAFVDENNLKAGDGLVFELKeCNs 109
                             56666666666666666542.22.22..222456677788*******..555555467899********************974333 PP

                             SEE..E CS
                      B3  88 sefelv 93 
                             ++  ++
  RcHm_v2.0_Chr2g0147411 110 TQIGFR 115
                             444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MAKSSSNPVV ELNGQEFWPL SGKPYFDVIL TKSHVKPIYQ LGIPAKLEPV LPSGSIHTVL  60
TFGAKSWEMT YNGEKRHKQF DRKSWGAFVD ENNLKAGDGL VFELKECNST QIGFRVQILR  120
GDIPDELLEK ANCEAEKPIF IQ