PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0147651
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 392aa    MW: 43529.2 Da    PI: 4.7037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0147651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19118167255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  RcHm_v2.0_Chr2g0147651 118 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 167
                             69*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MCGGAIISDF IPPTRSRRVT ADLVWPDFKK SSSGKRFAAG GRPLRSEILG LNDDFEADFQ  60
EFKDESDVDD DEEMVDSKPF AFSAGKTTSS AARGSKTVKS VECNSQAEKS AKRKRKNQYR  120
GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDA EARRIRGKKA KVNFPEEPPR  180
ASAKRAVKAN PQKVLPKTNL DNIQSNLNQN FNFVNGSDQD YYNSMSFLEE KPQTNNFGYM  240
DSVLTNGDFG LKSSTLSDPA PLYFSSDQGS NSFDCSDFGL FEQGSKTPEI SSVLSSVLEE  300
NENSLFLEDA NPTKKLKANP EDLVPAENNV VPKTLSEELS AFEMKYCQTP YLEGSWDTSI  360
DTFLNGDATQ DGCNPVDLWS FDDLPSMSGG VF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.11e-84ERF family protein