PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0147681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26173.8 Da    PI: 10.1861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0147681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-184087249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            ++e  snr+vtfskR++g++ KA ELS L++ae a i++s +g+++ +
  RcHm_v2.0_Chr2g0147681 40 KVEAASNRHVTFSKRKKGLFNKAAELSLLTGAETAAIVVSGNGRMFGF 87
                            67899***************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MAEPNNNNVL LSPVDESNNN NVLPPPVKKT KGRRRVEIKK VEAASNRHVT FSKRKKGLFN  60
KAAELSLLTG AETAAIVVSG NGRMFGFGSS SCDAVIHRYL AESNPQAARE PDRRNKNDAV  120
NSANLAKLRQ QLLEARRQLE EEKKLAVMIQ QRKQVAAVAG PAELWWEEEM IDQNPKELES  180
YSEALHRLKS DVERRAQQKI MNLPCRYTSL MDGRVVMGEN FMNNNNTNMN NM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-21M-type_MADS family protein