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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RcHm_v2.0_Chr2g0148261 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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| Family | HB-other | ||||||||
| Protein Properties | Length: 1174aa MW: 132480 Da PI: 8.5764 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 35.5 | 1.7e-11 | 6 | 57 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
+ t+ qle+Le+++++++yps++++e A+ gLt +qV+ WF rR +ek+
RcHm_v2.0_Chr2g0148261 6 KKTRLQLEALESFYAEEKYPSRTAMECHATVFGLTYKQVRGWFVERRRREKR 57
56889**********************************************7 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1174 aa Download sequence |
MEKTQKKTRL QLEALESFYA EEKYPSRTAM ECHATVFGLT YKQVRGWFVE RRRREKRKRT 60 ASELLSARNG LGDAATSVSS QKTKAASALK CKKKKMKASI QRLQNPDYLL KKVFRKDGPP 120 LGVEFDSLPS QALWKSTDSQ NDPPTCKENQ IAPKRGTVTK CAVTSHEEFN SSAPRKRHGA 180 RKDLMTVRKQ GAGKDLMTVK RHGGGKDLMK MKKHGCGKDL MTMKKPGGGK GLMTVWRATN 240 PDADARDFLI DMGLANGEVT HVSRKPQTRS RRLQQQKSVP KQGRLQSKLQ EKRKRFVKRR 300 EVESNKDSNQ KLPSKEKCEL ALEGTGSEEH LDKIAMLMDD EELELRELQA RPISLGCLNH 360 LTPNGDHGCS LCKDSLVKFP PSSVKMKQPF HLQPWDSSPE IVKKLFKVFH FLYTYAVVVD 420 LSSFSLDEFA QAFHDKDSLL LGKIHVALLK LLLSHVQAEL SSGSMPHLSK SCNFLAFIHW 480 VENQKSTLEF WERSLNPLTW TEILRQVLVA AGFGSKQGAI RREALSKEMS LMVKYGLHSG 540 TLKAELFKVL LVQGINGLKV SDLAKSLQIA ELNVSSRIDD LESLISSTLS SDITLFEKIS 600 SSTYRVRLNS SEDEVEELQS DSEDSGAVDD DLSDSGICSS DDDSGCNSGN SNIRRLTHIN 660 RHRSKNNMMK VHTEIDESHP GEVWLLGLME GEYSDLSIEE KLNSIVALVD LLHAGSTMRM 720 EDPANRIAEC IPNSLHSGSG AKIKRLSAKP HSVPRSSWVH AGNMDSVNKD HNCSKFHPID 780 SSLSISKFYE ERYSTKGKDC GSDLHPMQSV FLGSDRRYSR YWLFLGPCNA YDPGHRRVYF 840 ESSEDGHWEV IDTEEALCAL LSVLDDRGKR EALLIESLEK RLTFLCQAMS NRMASSDGSE 900 HLTQSDRSEL DNAREDTYSP VSDVDNNSSE TVNDSVPLNG TVVPEVRKKG EELKQKWKRI 960 QAFDSWLWNS FYLDLNSVKH GKRSYFDTLT RCESCHDLYW RDEKHCRICH TTFELHFDLE 1020 EMFAIHVATC REKETSTTFP EHKVLSSQIQ SLKAAIHAIE SVMPEDALLG AWKKSAHKLW 1080 VKRLRRTSCL SELLQVLTDF VGAINEDWLY KCKIVQGSCK LGGDIIASFA SMPHTTSAVA 1140 LWLVKLDDLI APHIKRACSE RRQETSIRGK HPTQ |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 50 | 55 | ERRRRE |
| 2 | 51 | 56 | RRRREK |
| 3 | 52 | 58 | RRREKRK |
| 4 | 53 | 97 | RREKRKRTASELLSARNGLGDAATSVSSQKTKAASALKCKKKKMK |
| 5 | 56 | 84 | KRKRTASELLSARNGLGDAATSVSSQKTK |
| 6 | 56 | 100 | RREKRKRTASELLSARNGLGDAATSVSSQKTKAASALKCKKKKMK |
| 7 | 92 | 116 | KKKKMKASIQRLQNPDYLLKKVFRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G12750.1 | 0.0 | HB-other family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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