PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0148421
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 481aa    MW: 52770.8 Da    PI: 6.1705
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0148421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.56.4e-33253307155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             +pr+rWtpeLHerFveav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl
  RcHm_v2.0_Chr2g0148421 253 RPRMRWTPELHERFVEAVKKLDGAEKATPKGVLKVMNVEGLTIYHVKSHLQKYRL 307
                             59****************************************************8 PP
2Myb_DNA-binding54.42.8e-17255306148
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r+rWT+e++e++v+avk+l g    t+k + + m+ +g+t +++ks++qky+
  RcHm_v2.0_Chr2g0148421 255 RMRWTPELHERFVEAVKKLDGAekaTPKGVLKVMNvEGLTIYHVKSHLQKYR 306
                             89******************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MKVGLSHVIM SHHGVSSVAQ SQTTKGITES YCTSLSPVHD FWGCESEGRS SVARECSSAR  60
LSPFIRTESF SSPTNVRESS LQHSKSTFSR SSVFCTSLYQ SSSSSSERQL GNLPFLPHPP  120
IYSQSISAVD SKYPMLLSED VSNQYDDEQS DYLMKDFLNL TGDASDDSFH GIGRGGDTIA  180
LTDQLEFQFL SDQLDIAITD NGENPRLDEI YEIPQASSKP AIELTCSKSC GSTAPPVDAL  240
SSHPSPGPSS AHRPRMRWTP ELHERFVEAV KKLDGAEKAT PKGVLKVMNV EGLTIYHVKS  300
HLQKYRLAKY MPEKKEDKKA SSSEEKKAAA SGMESDGRRK GSFHITEALR MQMEVQKQLH  360
EQLEVQRSLQ LRIEEHAKYL EKILEEQQKA GSALFSPQAL SSLTTNSIKD PEQHPSPSAG  420
VSPSQPTESD SLSPLSLKHK AADCSDSGAQ ACTKKLRIEE KPDEPVVENL SATVTTTTAS  480
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.11e-122G2-like family protein