PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0149271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 138aa    MW: 16148.6 Da    PI: 9.4192
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0149271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.5e-1371171099
                             HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-.......................TTHHHHHHH CS
                      B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr.yvlt.......................kGWkeFvka 71 
                             +l+++ l l  +fa++++++   s+ + l+ ++g +W v +++ +   +  +  t                       +GW +F+ +
  RcHm_v2.0_Chr2g0149271   7 YLTTA-LKLDINFAQKYNLS---SRNVNLQIPNGSTWPVICSVtN-IEEDgIRYTregvaryrypswcireevariryRGWIKFATD 88 
                             44444.899999*****887...457***************9952.3333333334588889999********************** PP

                             HT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                      B3  72 ngLkegDfvvFkldgr.sefelvvkvfrk 99 
                             ngL++gD++vF+++++  e +++v+++++
  RcHm_v2.0_Chr2g0149271  89 NGLQVGDTCVFEMIKQqPEITFLVHIIQA 117
                             ************99887999999999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MMQEPSYLTT ALKLDINFAQ KYNLSSRNVN LQIPNGSTWP VICSVTNIEE DGIRYTREGV  60
ARYRYPSWCI REEVARIRYR GWIKFATDNG LQVGDTCVFE MIKQQPEITF LVHIIQATYA  120
TKLHFNNISQ NMKLRRIP