PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr2g0149281
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 197aa    MW: 21697.5 Da    PI: 6.4948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr2g0149281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26e-1333121299
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             ++v+  s +  s+ + lp + a++ ++   +    ++ed++g +W++ +  +  +g++ +  GW+ F  +++L+ g ++vF++++ s
  RcHm_v2.0_Chr2g0149281  33 VTVM--SGNEFSKFMELPPNVARAVSLAD-Q--STVIEDSQGLRWNIAI--SSMDGSFAFHHGWNAFSLDHDLQLGNILVFTYIRGS 112
                             4555..6666677799******9997763.3..4788************..999999***************************989 PP

                             EE..EEEEE-S CS
                      B3  89 efelvvkvfrk 99 
                              f   vk++++
  RcHm_v2.0_Chr2g0149281 113 HF--AVKIYDN 121
                             99..9999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MGHEFKACVE CTEKCLLVHG NKSDASPVIT SFVTVMSGNE FSKFMELPPN VARAVSLADQ  60
STVIEDSQGL RWNIAISSMD GSFAFHHGWN AFSLDHDLQL GNILVFTYIR GSHFAVKIYD  120
NSGCEPCSFE TDQKKRKRDD RDSIFKGGWC YATDKSSMSK DGSGTCGCSD AEISKRLDEV  180
NGKGKAPITT QLICFKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-11B3 family protein